.. labibi documentation master file, created by sphinx-quickstart on Sun Nov 4 10:10:29 2012. You can adapt this file completely to your liking, but it should at least contain the root `toctree` directive. 2013 MSU Zero-Entry Workshop: Computational Science for Biologists ================================================================== Sep 23 and 25, 2013. 1425 BPS, Michigan State University. `Etherpad link `__ Lecturers: `Titus Brown `__; `Tracy Teal `__; Jory Schossau. TAs: Likit Preeyanon; Elijah Lowe. =============== ============================================================= Day Schedule =============== ============================================================= Monday 9/23 * 1pm: Getting started: logging in * :doc:`blast` * 2pm: `How computers work <_static/lecture-how-computers-work.pptx.pdf>`__ (lecture) * 2:30pm: **break** * 3pm: `iCER/HPC `__; shell introduction * 3:45pm: `pipelines and automation <_static/lecture-pipelines.pptx.pdf>`__ (lecture) * 4:15pm: :doc:`ipython-notebook` * 5pm: **end** Wednesday 9/25 * 1pm: :doc:`monte-carlo` * 3pm: `Presentation on background, bioinformatics, etc. <_static/cse-801-lecture1-welcome.pptx.pdf>`__ * 5pm: **end**. Also see :doc:`more-resources` =============== ============================================================= For many more resources on these topics, check out the course website for the `GED's ANGUS course `__ which is run at MSU every summer. Indices and tables ================== * :ref:`genindex` * :ref:`modindex` * :ref:`search`